PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G165800.1
Common NameB456_004G165800, LOC105793662
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 27086.3 Da    PI: 5.4855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G165800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20133184256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +kGVr+++ +g+++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ k++g+
  Gorai.004G165800.1 133 NFKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDKAAFKMRGA 184
                         58*******.**********98776..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.83E-31132193No hitNo description
PfamPF008477.2E-14133183IPR001471AP2/ERF domain
PROSITE profilePS5103223.393133191IPR001471AP2/ERF domain
SMARTSM003801.8E-37133197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31133192IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23134192IPR016177DNA-binding domain
PRINTSPR003671.8E-12134145IPR001471AP2/ERF domain
PRINTSPR003671.8E-12173193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNVEILSESD FNILESFQRF FDGFDESPPP PPTTTPTCDN FVLQPSYNRC LSFSGVFLNE  60
NWGDLPLKID DSEDMLVYST LRDAANSGWS PSNEADSTTV SSEACSEGKE KLMEVVEREP  120
NVLLPPSSRR GTNFKGVRRR PWGKYAAEIR DPKRNGARIW LGTYETPEDA ALAYDKAAFK  180
MRGAKAKLNF PHLIGSSYCE PIRVGSRRRS LEPPSASTTS PKRMKSTAAV TNSTAPTEVI  240
QMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29130197269ATERF1
3gcc_A2e-29130197269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477973.10.0PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-63ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D2R5Z70.0A0A0D2R5Z7_G
STRINGBra004873.1-P1e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-65ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]